Introduction

Endothelial cells only.

Load full data

Cleanup Endothelials

Load old clusters

PCA, tSNE, Clusters

Endothelial cell type annotation

Additional visualizations

New figures

Factor analysis

gs_saved has factors on the columns, gene-name in the rows. each entry is the gene score associated with each factor and gene.

cs_saved has factors on the columns, cell-id/cell-barcode in the rows. each entry is the cell score associated with each factor and cell.

Factors robustness

Correlations

Robustness for select factors

Milo

Object for milo

Set up in R

Design Matrix

Differential analysis

Visualize in R

Add celltype info

Cell type fraction distribution